Sentence examples for the given read from inspiring English sources

The assumption of a search for overlap between the 3' end of the given read and the 5' ends of the remaining reads was assumed when calculating ps.

Each thread maps the given read to a unique fragment of the genome.

For each read we selected the set of genomic matches having maximal identity for the given read.

In this calculation, we use a matrix D of distances among all n+1 sequences (reference alignment plus the given read).

At the beginning, all primers are considered to be equally probable matches for the given read and hence assigned a probability of pprimer = 1.

However, we did observe that the custom protocol Agilent platform performed quite comparably to RNA-Seq, at the given read depth, in virtually all categories.

Thus, in terms of the alignment matrix of a given read against the SV region we count the k-mer hits by alignment diagonal (Fig. 5).

For a given read, the best stratum consists of the alignment(s) with the fewest mismatches.

Recall from Section 2.3 that the labels of the irreducible edges for a given read are prefixes of the labels of transitive edges.

For a given read, the best alignment was kept if the second-best alignment had two more mismatches, otherwise the read was discarded as non-unique.

A maximum of 1 alignment to the reference was allowed for any given read, and the minimum anchor length was 10 bases.