Sentence examples for the full alignment of from inspiring English sources
RNI was first aligned to Homo_7 using these methods, and adjusted manually, and then aligned to the full alignment of all human PRAMEs guided by the Homo_7 alignment.
The full alignment of putative and validated PERK proteins is depicted in Figure S2.
The full alignment of 55 different ∼340 amino acid DBL2X sequences is shown in Figure S1.
For the full alignment of 237,882 16S rRNAs, the supports required just one hour.
The full alignment of L. infantum PERK with other known and putative PERK molecules is depicted in Figure S2.
If applied to the full alignment of 427 sequences, the optimal clustering parameters resulted in 117 clusters (taxonomic units or TU) and 199 distinct combinations of TU and GenBank "organism" entry.
For RB family proteins, eukaryote ancestral RB sequence was predicted using the full alignments of all 39 RB like protein sequences of eukaryotic organisms and its phylogenetic tree by the software GASP.
Maximum likelihood phylogenetic analyses were performed as described above for the full alignment for each strategy of long-branch exclusion on each of three partition sizes of interest (full alignment, A136665, A133065, as discussed in Results).
For instance, one example, the zebrafish actc1l gene best matched the human ACTC1 gene with 99% identity over the full alignment length of the gene but Homologene put actc1l in the ACTB orthologous group (id: 110648) where alignment percent identity was less at 94% (additional file 5).
Although the Iss statistic did not reveal significant saturation of the full alignment, the measure of skewness equalled the empirical threshold values in Hillis & Huelsenbeck [60], indicating that the alignment was only slightly more structured than random data.
Topological differences were found to be significant according to Shimodaira-Hasegawa comparisons of the full alignment topology to two of the other major partitions (full alignment and exon nucleotides without ycf1 and ycf2).
