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Furthermore, negative values at larger intervals for both treatments suggest that there was a systematic bias towards lower recombination rates in the lines used here relative to the expected map distances.
This might simply be due to the fact that the standard genetic map of T. castaneum [ 35], from which the expected map distances were derived, was based on different beetle populations than the ones used in this experiment.
Thus, the genetic coordinates of the markers in the IBM Syn10 map were adjusted by the expected map expansion factor.
This is the expected map length for onion based on chiasma frequency [ 44] and suggests that this map spans most of the genome.
The expected map coverage rate of this constructed linkage map was very high (100.0%), indicating that the linkage map developed in this work is almost saturated.
As in these aforementioned studies, the expected map coverage rate for the maritime pine linkage maps was high (about 100%), indicating that the maps developed in this work are saturated.
Similar(52)
The questions of interest are also usually different and, consequently, the expected mapping quality criteria are not exactly the same.
Using 1 marker per 10 kb means that the expected mapping resolution is at best 2.5 kb.
To be able to compare the slopes of the regression lines for the relationship between the mean relative difference between observed and expected map distance and the expected map distance of the control and the coevolution treatment, all expected map distances were ln-transformed.
The expected genome map length Ge was estimated under the assumption of random marker distribution according to the formula of [ 53].
We produced the expected CB map of the same region from the homologous/allelic chromosome/haplotype by randomly modifying a certain percentage of bands corresponding to a certain level of sequence divergence.
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