In the example of sequence alignment from three homologous sequences (Figure 1), the length of the match regions with larger than the constraint of the shortest primer length are regarded as the viable regions for primer design.
The examples of pairwise alignment in this paper use fasta program (FASTA package, version 3) and water program (EMBOSS package, version 6.3.1) for comparison while pairwise alignment section of ApicoAlign uses water program only.
"This single example of alignment of interests in no way constitutes collaboration or alliance".
An example of alignment columns produced by residue clustering can be seen in Figure 6 ab).
Figure 4a demonstrates an example of alignment reported by DOMAIN between 10 yeast proteins and three worm proteins, in which nine of the yeast proteins (all except Nyv1) and all three worm proteins are known to be involved in the pathway of SNARE interactions in vesicular transport in KEGG (Kanehisa and Goto, 2000).
This article presents the influence of the assessment method of variants, criteria and their weights, as well as preference scenarios of road alignment with the example of the section of the S61 expressway, which is a part of the first Trans-European Transport Network (TEN-T).
For the example alignment of 112 Gbp Illumina GA data, SAMtools took about 10 h to convert from the MAQ format and 40 min to index with <30 MB memory.
For the example pathway alignment of Figure 1, the loop iterates only once; the remaining extended similarity graph contains nodes defined on reaction subsets and, which gives rise to an empty conflict graph.
In most Hox genes, the 3′ downstream regions were well aligned among Drosophila species, and therefore we predicted 3′ UTRs based on the sequence similarity (for the example alignments of the potential 3′ UTRs, see supplementary fig. S2, Supplementary Material online).
Examples of alignment using particle filter are shown in the Fig. 11.
