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Using the GEO "Gene profile" search-engine, we have calculated the average of the expression values from 4 SCI and 4 control arrays, for the corresponding genes in the datasets published by DiGiovanni et al. [ 16].
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The dataset published by Obach et al. consists of Vss values for 665 compounds.
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The correlation matrix between areas under rice, wheat and maize with their respective yields gives contradictory results (significantly positive relation for rice and negative in the case of wheat), which raises doubt on the veracity of the dataset published by government agencies.
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We reanalyzed the dataset published by Metta and Schlötterer and found several issues that led us to a different conclusion.
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We next applied FADA to the dataset published by Welsh et al. [ 14], for the analysis of transcripts associated with prostate cancer.
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The coverage obtained was similar to that analysed in the dataset published by Gibbons et al.[ 12] for A. fumigatus (72% of the genes having an RPKM greater than 10).
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