Exact(2)
A major reason we have been able to gain insight at such a fine geographic scale is the quality of the dataset assembled.
As one of the few transcriptomes available for a non-squamate reptile the dataset assembled here will help fill the void of reptile genomic resources and provide key information for studies of amniote evolution.
Similar(58)
Furthermore, the unique dataset assembled to produce this paper is released open, free of charge along with its publication, which is another form of contribution to future research endeavors Additional file 1.
The mitochondrial dataset assembled included 129 terminal taxa (124 arioid species including one anchariid, four galeichthyines, and 119 ariines) and 2866 sites.
Together with the new 574 NAT2 sequences generated in this study (i.e., 287 individuals), the complete dataset assembled includes 38 African population samples and one sample of African Americans, totalizing 1,192 individuals (Table 1 and Additional file 1: Figure S1).
The second dataset, assembled and evaluated for episodes by Burleigh et al. (2008), consists of 85 gene trees from the Phytome comparative plant genome database and contains genes from 136 plant taxa.
To identify whether the genes identified for the PDZome dataset were essential for life of the particular organism investigated, we queried WormBase version 194, the Yeast Deletion Project and the E. coli phenotype dataset, assembled by Gerdes et al. [46] for (embryonic) lethal mutants.
Finally, to investigate the consistency of ME significance when using null models generated with different number of switching steps, we analysed ME patterns for the protein affecting mutations of a colorectal cancer dataset assembled from the TCGA (TCGA et al., 2008) and other studies, as described in the Supplementary Material.
Here, we have analysed the largest morphological and molecular dataset assembled so far from taxa within family Hymenogasteraceae.
We first surveyed the B. mori genome assembly to predict candidate pre-miRNAs using Srnaloop program and custom-designed filters (see Materials and Methods for details), we then searched Rfam database [54], an insect ncRNA dataset, and a CDS dataset assembled from the silkworm genome for removing those overlapping with these specialized sequences, yielding 7,241,352 candidate pre-miRNAs.
From a molecular perspective, the sequence datasets assembled to date have usually been marked by limited numbers of both taxa and characters.
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