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The RNA-Seq project on Chinese bayberry (Accession: PRJNA77861) has been completed, and the data (Accession: SRX176533) made public in our previous study [ 27].
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UPLC/MS/MS analysis demonstrated that fragmentation of kynurenine standard yielded three peaks with m/z ratio of 209, 192, and 146, which is consistent with the reported data (accession: K0009019, MassBank, [ 20]).
The gene expression data (accession number: GDS808) was imported into the network as substitute nodes as attributed by ProteinAbundance [18].
The publicly-available microarray data (accession number GSE3141 NCI GEO) from lung cancer patients resected at Duke was obtained and RMA-normalized using the publicly-available RMAExpress program (rmaexpress.bmbolstad.com/).
It should be noted that the CI compartment was isolated using FACS sorting of Meis1+ GFP mice, a gene whose expression does extend into the CM (see GUDMAP data Accession ID GUDMAP:12521).
The datasets used for the analyses described in this manuscript are available from dbGaP [ http://www.ncbi.nlm.nih.gov/gap]; specifically dbGaP accession number phs000095.v1.p1 for the GENEVA dental caries data, accession number phs000090.v1.p1 for ARIC and phs000091.v2.p1 for HPFS.
GEO Microarray Data Accession: GSE26309 The authors declare that they have no competing interests.
The data repository accession numbers and references to the corresponding publications have been indicated in Table 1.
The data (GEO accession number GSE21059) were background corrected but not normalized in order to preserve dependence across time points.
The full microarray data set is available in the NCBI Gene Expression Omnibus public database under the data series accession number GSE13507.
Microarray data accession number.
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