Exact(3)
The probe set IDs were converted to Entrez IDs with the (hgu133plus2.db) package as above, which were mapped to the consistent version of Recon2.
The discretized values were then mapped to the consistent version of Recon 2 (version 3, the lower bound of the AATAI reaction was set to zero to be consistent with the reversibility information of the model).
Transport reactions are generally under the control of promiscuous genes (in the consistent version of Recon 2 e.g. the gene SLC7A6 controls 294 reactions) and therefore transporters are not included into the core set as otherwise whole subsystems would be included in the output model due to one gene.
Similar(57)
To be comparable to the results of Folger et al. and Luo et al. [ 21, 33] the growth of the cancer cells was simulated on RPMI medium, the uptake reactions of the consistent versions of Recon 1 and Recon 2 were constrained with respect to the medium composition (Additional file 2: Table S2, medium composition sheet).
They finally have opponents who are embracing the most unpopular version of the conservative stance, which makes no exceptions for rape and incest (which is the only logically consistent version of it, because if life begins at conception, that applies to life borne of rape).
A review of existing alternative methods is extended by a thermodynamically consistent version of the method of intrinsic low-dimensional manifolds.
Rohweder alleged police had obtained a consistent version of events from the many witnesses to the incident.
Another factor, perhaps equally or more important in some quarters, was the failure to arrive at a consistent version of some (suitably-restricted) Principle of Indifference for assigning prior probabilities to hypotheses and the consequent waning of enthusiasm for this project.
We develop a polynomial-time algorithm that, given an arbitrary binary constraint network, either extracts (by edge removal) a precise tree representation from the path-consistent version of the network or acknowledges that no such tree can be extracted.
The primary context-specific models were represented as a matrix of 5317 rows corresponding to the reactions of the consistent Recon2 version and 156 columns for the number of models.
Because the library is embedded, your app uses a consistent version of Swift that runs on past, present, and future OS releases.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.
Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com