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The computation was executed on a personal computer with an Intel Xeon 3.00 GHz CPU.
The computation was executed on a standard laptop; it involved 1.6 M degrees of freedom and required 100 s for the pre-computation, and 0.3 s for the actual solve.
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Comprehensive accounts about how the preconditioners are coded, what storage is required and how the computation is executed for a given accuracy are presented.
The computation is executed by sets of blocks of threads.
■ Computational complexity: All the computations are executed at all of the participating parties.
The computations are executed on a Desktop Computer with core™ i7 3.50 GHz CPU.
The Reynolds averaged Navier Stokes equation has been utilized, and the computations were executed under the same conditions of the model tests to predict the speed performance, i.e., resistance and self-propulsion.
The 'host' code, used to control the GPU, is executed on the CPU; whereas the 'device' code, performing the majority of the computations, is executed on the GPU.
All the computations were executed in a Dell T7500 workstation and it took around half hour computational time for one case.
For the combined input set, the following computation was executed: all sequences were pairwise aligned with all other sequences using BLASTN with default parameters [ 83].
The computation of the partition of the 1 152 121 input sequences by cd-hit-454 and otupipe both took ∼5 min. The DBC454 computation was executed in parallel on 16 CPUs and took ∼13 min (wall clock time), which actually corresponds to a total of 3.6 h of CPU to generate a hierarchical classification with 23 different levels (i.e. ∼10 min per level).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com