The objective function along with the complete set of constraints is listed in Equations 1 to 9. Max Σ f i Σ e j ∈ E f i ∗ T f i ( e j ) s.t.
The description of the selected genes and the complete set of primer pairs are listed in Additional file 8.
The complete set of 914 orthologous sequences is listed in Additional file 2, Table S2 along with the designation of known or novel and the corresponding ensembl gene, transcript and protein identifiers for the dog, human and mouse orthologs.
As a first step, we ask what information is associated with these parts—we carry out a SPARQL describe query (query #2 in File S2) that lists the complete set of properties associated with all promoters.
One tabular file lists the complete set of reads with their corresponding cluster identifiers.
Table S6 of the Supporting Information lists the complete set of force constants utilized to replicate the NRVS data of A7F.
Table 1 summarizes the nine in vitro assay technologies, and Supplemental Material, Table 1 (doi:10.1289/ehp.0901392) lists the complete set of in vitro assays.
Table 4 lists the complete set of features used in the CRF algorithm, where the features in bold are utilized directly from the cTAKES output and the rest of the features are generated or modified by custom-developed processes.
The complete set of nodes N is divided into two lists: the nodes already considered are stored in permanent list L, and nodes not yet considered are stored in temporary list L ′.
The Dr. Zompo web application allows access to the unigenes from several different directions: (i) The complete set of unigenes can be browsed manually, listing almost all the associated properties and characterizations of each sequence in one table.
The complete set of EM and their binary representation are listed in Table 1, and illustrated in Figure 2. List of all EM flux vectors, ê i, and their binary representation, e i, for the toy network illustrated in Figure 1.
