It was found that among the clusters presented in Fig. 3, only the glass-network forming branchy- (a) and ring-like (b) clusters exhibit LF vibrational modes.
However, the clustering presented here evaluates each sequence against all the clusters and includes the sequence in the cluster for which it shows the highest sequence identity.
In this work, the clustering presented above was based on matrices S computed from whole 250 ns MD trajectories.
Therefore, the clinical characteristics of the clusters presented herein were not as distinct or as definitive as those for the naturalistic subtypes described by Swann et al [ 3].
[See Supplemental Material, Figure 1 (doi:10.1289/ehp.1002118), for a visual two-dimensional representation of the clustering presented in Figure 1.] In general, the two genetic factors and DNA adducts did not appear to contribute to the formation of the groups.
The rehydration transcriptome of Tortula, as defined by the clusters presented herein, is remarkably consistent with what we know about the desiccation response for this bryophyte and its metabolic activity during the first two hours following rehydration.
Because organisms have adopted a strategy of expressing batteries of genes under common regulatory mechanisms, the individual transcripts in the clusters presented are most likely regulated and controlled in a coordinate manner.
When the overall test was significant, the genes belonging to the clusters presenting very high mean ranks were considered to be regulated under the given condition.
In our specific problem, one is interested in identifying the clusters presenting dense connectivity within a cluster and sparse connectivity between clusters.
Thus, while the candidate cluster received the larger attention from other parties, the party cluster presented a higher willingness to dialogue with other parties.
