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Similar to the experimental observations, these transients must be preceded by a steady-state initialization phase from which the network relaxes back into the background state by way of complex internal dynamics.
Upwards vertically propagating IGWs interact among themselves and with the background state of the atmosphere.
This indicates the formation of a new dynamical phase considerably more ordered than the background state.
where #{s t =1,t=1,⋯,T} corresponds to the number of observations assigned to the background state (state 1).
The background state of plasma at times of wave occurrence is significantly different between the forenoon and afternoon sectors.
These perturbations, ρ ′/ρ o =−α T ′, are produced by temperature variations, T ′, from the background state temperature profile; α is thermal expansivity.
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Transition probabilities between the background states reflect the distribution of dinucleotides across all putative promoter regions in human.
The emission probabilities of the motif states are defined according to the PWM, and those of the background states are set to 1 for the corresponding nucleotide.
The transition probability from each motif state to the next is set to 1. Remaining transitions include moving to the background states (Fig. 1, dashed arrows) or moving to the first motif state (Fig. 1, solid arrows).
This score is computed as the ratio between two values (Fig. 2b): (i) the probability to emit the promoter sequence using the TFBS HMM in Figure 1, and (ii) the probability to emit the promoter sequence using an HMM comprised solely of the background states.
The temporal dependence indicated that some state changes in NGP elements were contingent upon the background states of other elements, suggesting a temporal order of accumulation of the changes, summarized as a form of network.
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