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The analyses implemented in JMATING focus on mating frequency data.
On both simulations we used a biogeographic scenario based on the results obtained on the analyses implemented in this work: a split between the Amazon and the Atlantic forest around 900.000 YBP and a split between North and South Atlantic forest circa 500.000 YBP.
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BWA outputs alignment in the SAM format to take the advantage of the downstream analyses implemented in SAMtools.
ReactomeFIViz uses Java based methods in the server-side to call functions in R. Users of our app don't need to install R in their machines in order to perform the statistical analyses implemented in the app.
Many of the same analyses implemented in the command-line scripts are also accessible programmatically via a set of Python libraries to aid developers who wish to build their own tools upon ITEP's data structures.
The Bayesian analyses implemented with NewHybrids also assigned MLGs from Římov to one taxon, D. galeata (with only one Daphnia remaining unidentified with a 95% posterior probability threshold).
TYL, JBKH, and DMS was responsible for the design, computational analyses, implemented the web-based tool, and drafted the manuscript with revisions provided by WCC and THC.
WCC was responsible for the design, computational analyses, implemented the databases, web interface development and draft the manuscript with revisions provided by HDH and RLP.
The three authors contributed to the development of the strategies of analyses implemented in UVWORD and UVCOUNT.
The coefficients of determination R2 values of 0.9523 obtained for the gmelina seed oil extraction process show that more than 95%% of the overall system variability can be explained by the empirical models of Eq. (14) which is specific case of the general predictive equation derived for the investigation from the multivariate regression analyses implemented on design expert.
MP carried out computational analyses, implemented the size-dependent enrichment analysis and drafted the manuscript.
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