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When showing ensemble results, a list of all ensemble members included in the analyses displayed needs to be given.
The hypergeometric distribution is in accordance with the analyses displayed in [60] hence represents a reasonable choice We ranked the modules according to both co-expression and dense connectivity separately and used the average of the rankings as an overall ranking.
Again, results were in line with the analyses displayed in Table 3.
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The results for all of the analyses display significant heterogeneity, some of which can be explained.
The results of these analyses displayed substantial overlap: both of the analytical methods used revealed similar dysregulation of 53 pathways in each of the four data sets.
MFI values were pre-processed, separately for serum and plasma, using probabilistic quotient normalization (PQN) (Dieterle et al, 2006) accounting for any potential sample dilution effects (Kato et al, 2011), and the PQN-normalized data were used in the statistical analyses displayed in the figures and tables.
The regression analyses displayed in Table 2 show the associations between high school dropout and long-term sickness or disability between ages 24 and 29.
The first two principal components in these analyses display the largest genotype variation (Table 2) and are graphically depicted in Figure 1.
However, for the present study, differences in taxon sampling or partitioning did not affect our conclusions, as the various analyses displayed fairly similar results, showing reciprocal overlaps.
For all-cause mortality but not for 30-day pneumonia mortality, the year-specific analyses displayed similar temporal inconsistencies as observed for hospitalizations (Figure 2).
Figure 2 also illustrates the same data analyses displayed in a proportion of densities chart (no statistical analyses performed).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com