The analogous values for the 5% false positive cut off were 18 to 65. Microarray coverage of UHRR was 62 ± 3% and 71±3%3% using 1% or 5% false positive cut off, respectively.
To assess the significance of the clustering results, the statistical over-representation of GO terms is averaged over this set of regulons and compared to the analogous values for 100 randomly-generated sets of clusters.
The intrinsic activities of the glucose transporters in normal and OA chondrocytes were also similar, as indicated by the analogous values for affinity (1.07 ± 0.28 and 1.49 ± 0.59 mM, respectively) and maximal velocity (0.27 ± 0.08 and 0.33 ± 0.08 nmol/μg protein/hour, respectively) obtained from the Michaelis Menten plots presented in Figure 1b.
Specificity was calculated as 0.323 (probability of VIA inflammation given class 2) plus 0.117 (probability of VIA normal given class 2) multiplied by the probability of class 2 (0.200), plus the analogous values for Class 1, i.e., 0.429 (probability of VIA inflammation given class 1) plus 0.276 (probability of VIA normal given class 1) multiplied by the probability of class 1 (0.682).
It can be observed that all concordance between all pairs calculated for set A is bigger than the analogous values for set B. This can be explained by the fact that WSIs in set A were prepared using autostainer and the same set of new chemicals while WSIs in set B were regular glass slides prepared earlier, some with and some without autostainer, and using the chemicals available at the time.
The drug isolation efficiency was used as an evaluation factor: the ratio of the mean height of peaks recorded for all analytes when a sample was determined to the analogous value obtained for the standard drug solution (with analytes at the same concentrations).
For example, if we superimpose R1 in the L and T conformations, the RMSD of the corresponding R2 repeats is 1.6 Å; for the T to O transition the analogous value is 2.1 Å, and for O to L, 3.1 Å.
The analogous value Y n/pal is defined for the non-palindromic actual dataset.
The MIC and MFC values for the susceptible strains (n = 20) and strains with intermediate susceptibility (n = 8) were statistically low compared to the analogous values obtained for the control sample and for the samples that were only briefly pretreated with TTO.
