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At the same time, a total of 1670 genes were annotated as pseudogenes in the NoAz genome, almost double the amount annotated in any other bacterium examined here.
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Additionally, mice have a greater amount of total annotated protein-coding genes [ 41], and non-homologous genes are mainly responsible for the formation of new interactions (Additional file 2: Figure S4).
Leveraging on the rapid growth in the amount of the annotated data and the great improvements in the strengths of graphics processor units, the research on convolutional neural networks has been emerged swiftly and achieved state-of-the-art results on various tasks.
The differences were in the amount of contigs annotated for each GO term.
unique sequences" refers to the total amount of the different annotated contigs and singletons for each gene class listed in the Table.
The results for the coverage calculated for each method are shown by the curves in black in Figure 3 (black circles), presenting the amount of gene pairs annotated to common KEGGs that remain at each r≥x or N≥x.
Obviously, with each new genome sequenced and annotated, the amount of data for evaluation will grow and thus also the number of domains that have an assigned DVI.
A SPARQL (http://www.w3.org/TR/rdf-sparql-query/) interface may be built when there is a substantial amount of annotated data for this purpose, which requires semantic annotations in our XML format, conversion to RDF or OWL, and implementation of a semantic storage.
The 2013 database issue of the Nucleic Acids Research journal lists 1512 molecular biology databases, which provide a vast amount of annotated data and meta data that could be used in a systematic way (Fernandez-Suarez and Galperin, 2013).
The lack of sufficiently large amounts of annotated data necessitates the use of transfer and multi-task learning approaches to augment the feature space and to preprocess the data.
Machine-learning approaches require a fairly large amount of annotated samples for training, which were not available in this case.
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