Sentence examples for the alignment used from inspiring English sources
The aligned sequences were imported into MacClade ver. 4.08 [ 48] and the resulting gaps in the aligned sequences were manually removed to correctly reproduce the alignment used by Azuma et al. [ 43].
This last case corresponds to the alignment used in this work.
These latter were designed before knowing our results on enzyme diversity; thus, the sequences from OM60 clade were not included in the alignment used to construct the primers.
The alignment used by modern NY 343 was a major transportation route that passed through the colonial settlements of Wassaic and Amenia.
The route was realigned from Arnold Way onto Alpine Boulevard as it passed through Alpine and the Viejas Indian Reservation, before entering the Laguna Mountains and the Cleveland National Forest on the alignment used by I-8.
The State Council of Parks wanted to use the alignment used by the Odell Parkway, which still would require demolition of thirty homes in the Cedar Knolls section of Yonkers, while other groups wanted the parkway to be aligned through Crestwood, which would cost 100 homes.
To align the motif common to MYB members, we manually adjusted the alignment using BioEdit.
This method uses iterative estimation of the alignment (using nearest neighbour search) and conversion estimation (classical GMM conversion).
Protein sequences were converted back to coding DNA sequences to conserve the codons position in the alignment using RevTrans [55].
Ambiguous or uninformative positions were removed from the alignment using Gblocks v0.91b (Castresana 2000).
A phylogenetic tree was constructed from the alignment using Phylip algorithms [ 34].
