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This is again why it's important that we choose the alignment to be considered over many projected cross-sections.
Many also enable the alignment to be edited to correct these (usually minor) errors, in order to obtain an optimal 'curated' alignment suitable for use in phylogenetic analysis or comparative modeling.
Two mismatches were allowed for the alignment to be made.
If the putative exon does not have enough base pairs in the alignment to be scored, we accept H0.
Previous work on single proteins has shown that the method requires a sufficient number of sequences in the alignment to be statistically meaningful.
This function prints a coloured RC-MSA representation of the sections of the alignment in which the reference alignment and the alignment to be inspected differ.
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These devices allow for variations in electric field geometry on the polymer alignment to be examined systematically.
Therefore, we do not expect the sequence alignment to be visually "convincing" by itself.
The range of the multiple alignments to be included in the analysis was decided based upon alignment quality.
For each confidently detected domain, the relevant information and the alignment to the query are shown.
The alignments to reference were parsed to count all inserted, deleted, substituted and unmapped bases.
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