Sentence examples for the alignment indicate from inspiring English sources

Solid lines over the alignment indicate protein domains as defined previously for P. abyssi NucS11 (black, DNA-binding; grey, nuclease).

Plus and minus signs on top of the alignment indicate sites under positive and negative selection, respectively.

Bracketed values at the end of the alignment indicate the number of residues in the whole channel.

Arrowheads below the alignment indicate conserved residues (L51, N54, R56, and E82) in the coiled coil domain of Sgol2 mapping onto binding sites between PP2A and Sgol1.

The lines above the alignment indicate the locations of proposed trans-activation motifs (NI and NII) and the conserved regions in the GRAS proteins were defined previously.

The alignment indicated a potential K+-binding domain conserved only in ASNase2 which leads to the suggestion that ASNase1 is a K+-independent ASNase, whereas ASNase2 could be a K+-dependent one.

The EST alignments were filtered based on requirements for minimum alignment length and sequence identity in order to differentiate cases in which the amino acid sequences were supported by a strong alignment from the cases in which the alignment indicated a paralog rather than a direct validation of the sequence by genomic data.

Sequence positions in the alignment indicating unexpected patterns were recorded.

The absence of nonsense mutations in the alignment indicated an absence of pseudogenes.

Oxidant stable proteases (OSPs) from various strains were also included in the alignment (indicated by black dots).

Visual inspection of the alignment indicated that one of three consecutive deoxythymidines (or T s) was deleted.