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The quality of the alignment determines the aggressiveness of the sampling in R osetta(19).
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The coordinates of the LTI were recalculated so that the alignment determined by BLAST was at the center and flanked on each side by a genomic region three times the size of the putative parent protein.
First, it is clear that the multi-segment alignments computed by SCOW, COW and Generative Multisegment are superior to the alignments determined by ordinary dynamic time warping and the linear alignment method.
This alignment determines the coding part together with the reading frame in the EST.
Intraoperatively, these PSPGs represent the component alignment determined from the preoperative software plan.
To do this we parsed the query and hit nucleotide lengths from the BLASTx best alignment, determined the orientation of the query sequences, parsed the query start sites (nucleotide) and hit start sites (amino acid), converted the amino acid sequence into nucleotide lengths, and calculated the number of base pairs missing to the hit start site and hit end site.
Ye et al.[14] reported that the ZnO/Si heterojunction exhibits a type II band alignment, determined by the Anderson model.
The alignment path determines which points in the two series are mapped to one another.
Similarly, the suboptimal alignments (determined by variations of the Temperature parameter) generated by the partition function of Probalign, might as well improved the ability of this program to deal with sequences with non-conserved terminal extensions [ 8].
The color bar coordinates (here 0.5,1.0) refer to the alignment point, determined by the halign and valign attributes.
The alignment is determined based on tracking of the path of each marker through the projections.
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