Another feature of this alignment consistent with our earlier analysis is the observation that Bax α2 and α3, on the right hand side of the peptide in Figure 4a, are more distant from the peptide compared with their prosurvival protein counterparts.
Sequence alignment was performed using the ARB integrated aligner used through an iterative process to generate a nucleotide alignment consistent with the Pfam (36) Fer4_NifH amino acid alignment.
MUSCLE [ 65] was used to produce a multiple sequence alignment of the translated amino acid sequences; a custom java program was used to force nucleotide sequences onto the corresponding amino acid alignment sequences to yield a DNA sequence alignment consistent with the translated sequences.
Allowing only the three branch alignments adjacent to node O to vary will certainly allow an alignment consistent with τ'.
Schlemm's canal endothelial cells showed a statistically significant preferential alignment, consistent with a shear-mediated effect.
The number of osteolytic areas and their sizes in our 40 patients were not related to loss of postoperative AC alignment, consistent with other reports [34, 35].
With the exception of ESAG10, which is highly conserved, significant values of Φ were obtained for each ESAG alignment, consistent with recombination within these loci (Table S2).
The additional results, however, with our cautious interpretation, are as follows: "Frontal-RATN theta phase synchrony around 1 s post-stimulus during successful encoding correlated with frontal theta phase alignment consistent with their differing correlations with CFC and phase synchrony".
The alignments are consistent to a large extent with the results obtained using two other complementary approaches.
Concerning the analyses of the experimental data, our alignment filtering consists of (i) discarding alignments consistent with a SNV from intragenomic origins, (ii) retaining the unique alignments, and (iii) safely analyzing the U and MU regions.
