After indels and poorly aligned positions were removed the alignment comprised 15,685 bp including 6,986 informative sites.
The alignment comprised 1269 positions (423 codons) of the rbcL gene.
Among the 3,562 bp, the alignment comprised 1,627 45.688%) variable sites, of which 1,392 39.088%) were parsimony informative.
The alignment comprised a total of 80 HML-2 loci, including the polymorphic proviruses HERV-K113 and HERV-K115.
The alignment comprised 367 bp, with 243 constant sites, 27 parsimony-uninformative characters and 97 parsimony-informative characters.
The alignment comprised 709 bp of EF-1α sequence appended by 51 indels encoded as binary characters for a composite length of 760 characters.
The alignment comprised the same 396 bp of the RdRp gene used for the phylogenetic reconstruction.> A total of 26 out of the 30 known bat species known for Iberian Peninsula were screened for CoV and 14 samples taken from 9 bat species, all included in the family Vespertilionidae, were positive for CoV RNA (Tables 1 and 2).
The LF for each pathogen analysed, coming from the output file after the BLASTP analysis [18], which contains the alignments comprising local, significant sequence similarity between the pathogen query protein and a subject human one, have been carefully scrutinised.
The initial alignment comprising a total of 18 sequences had a length of 16,858 bp.
The concatenated alignment comprising 506 kb included 12 polar bears, one brown bear, and one black bear.
