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The alignment and comparison of LAMAI 31 β-tubulin sequence showed high similarity with two different species: Aspergillus cf. tubingensis and Aspergillus pulverulentus.
The macrosynteny between the Solanaceae species facilitates the alignment and comparison of genetic maps and genomic sequences (Bombarely et al. 2011).
The size of rrnS and rrnL genes in C. sinicus were calculated to be 654 bp and 1,139 bp, respectively, on the basis of the alignment and comparison of their counterparts in N. cristatus.
The alignment and comparison of the 16S rRNA gene sequence of the strain ASU-06 to the published 16S rRNA gene sequences in GenBank database by BLAST search were determined.
The alignment and comparison of paralog sequences as detailed in Katju and Lynch [ 35] enabled the identification of duplication termination points and the degree of structural resemblance between paralogous sequences.
Results of conventional characteristics concluded that ASU-06 could be identified as Sphingomonas sp. The alignment and comparison of the 16S rRNA gene sequence of the strain ASU-06 to the published 16S rRNA gene sequences in GenBank database as well as phylogenetic analysis confirmed the taxonomic position of the strain as Sphingomonas koreensis.
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The alignments and comparison of the OsPTR full-length protein sequences and the PTR domain sequences illustrated that most of the amino acids in TM regions in or out of the PTR domain in members of the same phylogenetic subfamily were very conservative.
Inspection of the alignment and comparisons to similar alignments produced using CLUSTALW [ 16] showed that the MUSCLE alignment was better at correctly aligning the zinc coordinating amino acids and fewer manual adjustments were required than with CLUSTALW results (data not shown).
KB carried out all the experiments, alignment and comparison of the sequences, phylogenetic analyses and drafted the manuscript.
Previous research has also shown that "Scan-vs-BIM" systems that are based on the geometric alignment and comparison of as-built laser scans with as-designed BIM models can effectively recognize and identify MEP components as long as they are constructed near their as-planned locations.
Four domains in the SVCV-C1 G protein were determined by alignment and comparison of the secondary structures with PyMOL software (DeLano Scientific, http://www.pymol.org).org
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