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Both (i) and (ii) were designated "similar modification" if the similarity of the aligned stretches was over 40%.
Because of length variations between the sequences, we modified the procedure of Ding et al. [ 48] and defined two sequences as paralogs if the aligned regions were over 70% of the shorter sequences.
This description should make it clear that the alignments are reshuffled over the entire aligned region encompassing all of the domains.
Align the grid so the center grommet is over one of the heavy lines.
The 83.3% of the AAs thus predicted are correct (Fig. 2), but stop codons (that do not align to the protein domains) may be over-predicted for short sequences with strong codon bias, causing a low precision of 24.0% for stop codons.
But when these four principles are aligned within you, the internal debate is over and all future decisions regarding the matter have also been made.
This set consisted of 12 619 784 uniquely aligned sequences that should be over-represented at hypersensitive sites.
end{aligned} (A.4) Here the average is over the thermodynamic local equilibria at the QWs i and (i+1).
end{aligned} (4.20)Here the integral is over a sufficiently small positively oriented circle centered at ( lambda ).
The IRV is trained by gradient descent to minimize the error, equivalently, the negative log-likelihood given by [47] begin{aligned} - sum t({{mathcal {T}}})log left[ z({{mathcal {T}}})right] + (1-t({{mathcal {T}}}))log left[ 1-z({{mathcal {T}}})right], end{aligned} (6 where the summation is over the training instances, ({{mathcal {T}}}).
For instance for ( lambda _0 ne 0 ), begin{aligned} m ( lambda _0 )= & mathrm{rank},A_1 nonumber = & mathrm{rank},oint _{lambda _0 } R_V ( lambda ) 2 lambda d lambda, end{aligned} (2.22 where the integral is over a small circle containing ( lambda _0 ) but no other pole of ( R_V ).
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