This statistical analysis was done for both the CDI and CEM tasks by taking 1,000 bootstrapped samples from all 2,478 articles in the test set that had annotations.
Expression profiles for several of the genes repressed by sleep in both the heart and lung that have annotations related to ER stress are shown in Figure 4.
For example, it is possible to write a query to find all model elements that have annotations to any Reactome pathways.
The following query looks up models that have annotations to rat (http://identifiers.org/taxonomy/10114), cytosol (http://identifiers.org/goo/GO 0005829), and calcium ion (http://identifiers.org/chebi/CHEBI:29108).
For example, she can filter out the documents that have annotations on parsimony only across the documents that contain parsimony as an annotation for the methods used in phylogeny study.
Whereas previous versions relied heavily on choosing proteins that had annotations from Swiss-Prot associated with them, this new edition places more emphasis on compiling complete sets of homeodomains from a diverse range of species.
On the contrary, sequences that have annotations based on experimental evidence (i.e., Uniprot ID P84990, P73202, and P09927) function as light receptors which does not imply a transporter function (see Table S4) [ 30, 31].
In the Annotation Download (http://www.ebi.ac.uk/QuickGO/GAnnotation ) page, type the following query into the 'Advanced Search' box; This will search for annotations to human proteins which are annotated to the GO term 'serine-type endopeptidase activity' and exclude any proteins that have annotations to this term using manual evidence codes.
This led to a set of 839 probes that have annotation information and then this set was subjected to a minimum fold change criteria of 1.5 between any of the three possible comparisons: 5 month vs. 1.5 months, 12 months vs. 1.5 months and 12 months vs. 5 months.
The gray bar indicated the total contigs, and white indicated contigs that have annotation in NR database.
The function of only nine proteins was predicted (and provided in Supplementary Table SI-2 in Supplementary Material) because the remaining five are mapped to proteins in yeast that have annotation only with very general GO terms.
