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Three one-parameter Archimedean copulas, including Clayton, Gumbel, and Frank families, are fitted and compared for different combinations of marginal distributions that cannot be rejected by statistical tests.
However, the number of alternative hypotheses that cannot be rejected increases for the sub-alignments containing the least conserved residues.
This program determines the simplest model of evolution that cannot be rejected in favour of a more complex one that gives a significantly better tree.
The only alternative place of the bat that cannot be rejected by ML analysis of aa sequences is on a common branch to the Lipotyphla (hedgehog+shrew).
These methods, as well as ours, can be seen as picking the model, from the set of all models that cannot be rejected based on the recorded data, that minimizes the objective function based on the prior.
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There is a high probability (P > 0.05) that nuclear genes would be fixed in these populations under neutrality, suggesting that drift cannot be rejected as a possibility for morphological divergence [Additional file 3].
No asterisk means that H0 cannot be rejected.
We found that normality cannot be rejected (P < 0.05) for the majority of our samples; therefore, a parametric statistical analysis was selected.
Hence, C 2 N (H) ≥ ε implies that the hypothesis cannot be rejected that two of the copies of the genotype belong to different clones including the case where all copies result from sexual reproduction.
It does say, however, that the null hypotheses cannot be rejected; that is, that random effects and/or data biases account for the pattern recovered (implicit in all phylogenetic analyses).
Noticeably, the γ value indicates that this forecast cannot be rejected.
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