Exact(2)
Moreover, with the incorporation of allele configurations that allow alignment of the parental maps (i.e., shared SNP markers), allele effects from both parents can be studied simultaneously (Hackett et al. 2014).
For example, in comparing 3D protein structures, which often share structural similarity in only part of their overall fold (Chothia and Lesk, 1986), it is advantageous to adopt local structural alignment algorithms that allow alignment of spatially local units of 3D structure that may not be composed of contiguous colinear residues in the primary sequence (Gibrat et al., 1996).
Similar(58)
The digitised images were converted to a mathematical algorithm that allowed alignment to 3D voxels and the construction of a 3D image.
In contrast, the other two HMMs that allow for alignment perform much better on this clinical dataset, indicating the alignment is indeed an important issue for time series classification.
As a result of the modeling it is possible to identify the processing conditions that allow the alignment of SWCNTs in an epoxy resin through the short-time application of a DC electric field.
This predictive ability is most likely due to the algorithms within the dotplot that allow for alignment of sequences with a high mosaic nature, both in sequence and orientation.
It was demonstrated that amino acid phosphoramidate monoester nucleosides with specific amino acids such as l-aspartic acid and particularly l-histidine, in there acid form, are fulfilling the requirements of structural and electronic properties that allow proper alignment of α-phosphorus atom in the polymerase active site, mimicking a nucleoside triphosphate.
Notably, the intracellular epigenetic program regulating adult neurogenesis is proposed to be quite similar to the epigenetic regulation occurring during development, but is also determined by a myriad of new extrinsic physiological and environmental stimuli [ 33], that allow the alignment of neurogenesis with the external requests.
Under relaxed conditions that allow an overall alignment, the two protein sequences are 70% similar and 63% identical (see Methods).
Other programs that allow for fuzzy alignments to mimic hybridization conditions, such as GCG's findpatterns or EMBOSS's fuzznuc do not scale well with 200000 probes at the genome level.
Protein alignments were performed with ClustalW2.0.9 [ 90] for all or selected subsets of TvBspA sequences and took advantage of the iteration process (iteration on the final alignment for all 911 TvBspA or for each step for reduced set of sequences) that allow improvement of the alignment quality.
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