Sentence examples for tf for which from inspiring English sources

The algorithm simply transfers the PFM of the TF for which the highest DNA-binding domain similarity to the given query factor was computed.

For example, the current release of MatBase (version 8.0) contains 1,751 human TF for which there is a position weight matrix description of the binding site for only 728.

One example of a TF for which ARACNe-inferred interactions are confirmed experimentally corresponds to VND7/ANAC030 (AT1G71930).

This software also allowed the identification of TF for which the number of TFBS in the DE genes was significantly enriched.

The results allowed the identification of TF for which the number of TFBS in the DE genes was significantly higher than the number expected by chance.

For each TF for which both MotEvo predictions and at least one known site were available and for each intergenic region, we calculated the sum of the posteriors of all binding sites in the region.

After removing unknown/unmatched TFs and TFs for which we do not have prior binding specificities in TRANSFAC, we are left with 70 unique TF-promoter pairs in the positive set, which include 23 unique TFs.

The PFMs of the TFs for which the highest PFM similarity to the TF of interest was predicted, are in turn merged to generate the predicted PFM.

As a means to make the search for FOX and Ds lines convenient, we provided [RiceFOX] and [Closet DS] strings on the list of the search page of each TF family of rice and maize, respectively, for those TFs for which mutants are available (Fig.  3B).

Nevertheless, there are some TFs for which the opposite is true, as illustrated by the corresponding results, broken down for each TF, that are shown in Additional file 1: Figures S16 and S17.

We were, for instance, able to identify 447 known TFs for which no known binding site model is available in an existing database [43,45-49].