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Discover LudwigExact(2)
So, we implemented the conceptualization and co-occurring terms enrichment technique in our work, for a given short text and presented a novel idea of including verb terms in text enrichment.
In the subsequent text, enrichment and depletion are considered related to one target AMP family relative to all other AMP families.
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The advantage, short-term and long-term, is that it makes it far easier to run text-enrichment processes in parallel (many sections can be marked at the same time).
Terms per cluster are derived from Gene Ontologies (GO) as in Figure 3B (scaling of text: DAVID enrichment score).
Summarizing terms per quadrant are derived from Gene Ontologies (GO) as in Figure 3B (scaling of text: DAVID enrichment score).
Bold text indicates enrichment with a highly significant p-value (p < 0.0001, Fisher's exact test), and italic text indicates depletion with a highly significant p-value (p < 0.0001, Fisher's exact test).
While the results are preliminary, a similar text-driven enrichment analysis that used the DO rather than the GO also showed improvement when annotations mined from the Gene Wiki were included alongside annotations mined from PubMed abstracts (data not shown).
A popular children's book author, using the pen name of Marcia Martin, creator of the Donna Parker series, as well as 22 books for beginning readers, and some of the first enrichment text books in the "New Mathematics," she was born and raised in Philadelphia, and lived in Rye, New York for 56 years.
The output is a text file with enriched category and a GO enrichment chart.
Enrichment of text documents with semantic metadata reflecting their meaning facilitates document organization, indexing and retrieval.
We also observed through the second PoC that enrichment by text extraction techniques was more efficient to interests described in English, as entity, concepts and their relationships and keywords are more complete for English terms.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com