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The genome sequences used in the above tests were downloaded from the following community sites: A. thaliana from TAIR, A. lyrata from JGI, Landsberg erecta from 1001 Genomes and human and other primates from Ensembl.
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For all reported cases, results of genetic tests are downloaded from the genetics department, if these results are available.
Kaplan Meier analysis was conducted online, and the resulting survival curves and P-values (log-rank test) were downloaded.
Despite the controversy, more than 20,000 copies of the test files were downloaded from the group's Web site, said Talal Shamoon, a computer security expert who heads a committee of the Secure Digital Music Initiative.
The test sequences were downloaded from the HMP-DACC (http://www.hmpdacc.org/) and sequences were extracted from files containing subgingival data representing 24 patients, four sequencing centers and two regions of the 16S gene.
Test exons were downloaded from FlyBase [ 38] using Drosophila melanogaster annotation version 4.2.1.
The test datasets were downloaded from TCGA Data Portal (https://tcga-data.nci.nih.gov/tcga/).
After completing the validation session, the tested devices were downloaded using the dedicated software (Domino Light; Somnomedics GmbH).
Three tested genomes were downloaded from the National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/): Rickettsia prowazekii (GenBank: AJ235269), Borrelia burgdorferi (GenBank: NC_000948 and AE000783) and E.coli (GenBank: NC_009837, NC_008563 and NC_010468).
Five each of Affymetrix Human Genome U133 plus2.0 CEL files for HBRR and UHRR samples from MAQC test site 1 were downloaded from Gene Expression Omnibus database (series accession number GSE5350).
As for the "CAMP test set," the sequences were downloaded from the new release of CAMP database [ 20].
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