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For all tests of neutrality, coalescent neutral simulations were run under different demographic models to assess the significance of the resequencing data.
Tests of neutrality (for models that are based upon neutral stochastic assumptions, like distance, parsimony, and most standard models for maximum likelihood) and tests of saturation (extrapolation of branch lengths over lineages where sites have suffered multiple hits can quickly reach its limits) are critical.
Tests of neutrality using stringent significance thresholds, performed under the standard neutral model, revealed one to seven outlier loci for each species.
We applied four different tests of neutrality to identify the genomic regions that deviate from neutral expectations potentially associated with fiber and linseed divergent selection.
Correlative studies have a central role in tests of neutrality and novel analytical techniques are continuously developed to enable the fit of neutral and non-neutral models to observational data [16] [19].
Several tests of neutrality confirmed that all the eight fragments evolve under a standard neutral model of molecular evolution.
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(a) Tests of neutrality-Tajima's D and Fu and Li's F* and D* tests Neutrality tests were used as an indication of recent population expansion.
Codon-based z-test of neutrality showed that observed mutations are significantly neutral only within concatenated Groups I and III.
Can a definition be proposed that meets the test of neutrality (that is, does not prejudge any policy question)?
Selection pressure was examined with the test of neutrality of Ewens-Watterson [91], [92].
Therefore, it is convenient to use an alternative test of neutrality.
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