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Upon testing for concordance with the HWE principle, five studies were found to deviate from HWE and were excluded.
Testing for concordance requires determination of the QTL genotype of several individuals, which can be determined for family patriarchs by either a daughter or granddaughter design (Ron and Weller 2007).
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As there were slight differences among groups, we tested for concordance across sites and stakeholder groups.
These locations were used to test for concordance between locations of candidate genes and identified QTL.
Seven hundred and four SNP markers on the Illumina BovineSNP50 BeadChip within the QTL confidence interval were tested for concordance.
Resulting VCFs were tested for concordance against benchmark whole-genome VCFs from the Genome in a Bottle Consortium [ 21].
A generalization of McNemar's test was used to test for concordance of response (partial, stable or progression) by CT and by FDG-PET/CT.
Individual gene alignments were also tested for concordance with the concatenated sequence tree using the AU test in CONSEL and with each other using rSPR.
The median pretest probability estimates between the two methods were compared using the Mann-Whitney U test; Spearman's rank correlation coefficient statistic (rho) was used to test for concordance.
The genotypes of the 704 SNPs for the 10 sires with inferred genotypes for the QTL from the daughter design were tested for concordance, of which five were heterozygous and five were homozygous for the QTL.
We tested for concordance between mRNA and protein expression levels in snake venoms by means of mRNA-seq and quantitative mass spectrometry for 11 snakes representing 10 species, six genera, and three families.
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