Sentence examples for testing as implemented from inspiring English sources
Overrepresentation of GO Slim terms was calculated with hypergeometric distribution followed by a modified Bonfferoni correction for multiple testing as implemented in GeneMerge [ 72].
Overrepresentation of GO Slim terms was calculated using hypergeometric distribution followed by a modified Bonfferoni correction for multiple testing as implemented in GeneMerge [ 72], where the e-score is comparable to a P-value.
To allow use of the full lower level F-test maps and due to the data's unknown noise distribution, higher level group analysis was then performed using permutation testing as implemented in FSL Randomise (v2.1) (Nichols and Holmes 2002).
Because there were multiple confounding covariates related to disease status, we restricted testing of covariate relationships to physiologically plausible relationships (see Methods section) and used a greedy search algorithm based on log-likelihood ratio testing, as implemented by the stepwise covariate method.
Parametric bootstrap testing as implemented in Treefinder identified a ' glob2/3 duplication-in Sophophora subgenus' topology as the significantly better fit (p = 0.96) of the data, compared to an alternative tree topology reflecting a ' glob2 or 3 deletion-in Drosophila subgenus' scenario.
The most appropriate model of nucleotide sequence evolution was identified using likelihood ratio tests as implemented in Model Test [ 48].
A Mantel test as implemented in Mantel Nonparametric Test Calculator, version 2.0 [ 110] was used to test for isolation by distance within identified lineages/haplogroups.
Wilcoxon test as implemented in the R programming language was utilized, part of the "stats" package, with confidence interval 99% and alternative hypothesis being "greater" [74].
Relationships between phylogenetic distances of bacterial communities and soil properties were assessed by Mantel tests as implemented in PRIMER v6 (Clarke and Gorley [2006]).
Mantel tests as implemented in PRIMER v6 were also assessed to analyze the relationships between phylogenetic distances of bacterial communities and soil properties.
Haplotype blocks were identified using the 4 gamete test as implemented in Haploview.
