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Mutation patterns and other categorical count distributions were tested for significant differences by the Fisher's Exact Test or unordered R×C contingency tables using the "Fisher-Freeman-Halton" test implemented by the StatXact statistical analysis software package (CYTEL Software Corporation, Cambridge, MA).
In many other cases, applicants are rejected because they have failed a polygraph test implemented by the defense contractor that retained them.
Data partitions were tested for substitution saturation using a non-parametric statistical test implemented by DAMBE 4.5.47 [56].
Third, we used the M-ratio test implemented by Garza and Williamson [36], which uses the statistic M (the ratio of the number of alleles to range in allele size) to detect reductions in effective population size for a sample of microsatellite loci.
cWilcoxon signed ranks test implemented by the wilcox.test function of R package stats version 2.6.0.
A haplotype-based test, HST, was also used, with significance assessed using a permutation test implemented by DnaSP 4.0 [ 55].
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In Additional file 1 weprovide a full example of a CML document produced by our current implementation.We note that this passes the tests implemented by the CML validation service [44].
When comparing the results of the two methods, statistical significance tests were performed using the suite of significance tests implemented by NIST[30].
The ordinary Student's t-test, implemented by MATLAB (MathWorks, Natick, MA), was employed for testing differential expressions in a gene-by-gene manner.
We tested whether the CJS-model assumptions were met with parametric goodness-of-fit (GOF) tests implemented by the simulation procedures available in MARK [ 11].
The null allele and dropout tests implemented by microchecker did not suggest that large allele drop out or null alleles were an issue.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com