Sentence examples for test for congruence from inspiring English sources

The S-H test for congruence demonstrated that all ML trees generated for individual MLST loci were significantly incongruent (Table 3) and comparison of the Δ-lnL values for individual ML trees indicated that these were not significantly different from randomly generated trees suggesting a non-clonal population structure.

Secondly, the species tree was used to test for congruence with the simultaneous-analysis A2 topology.

We used two alternative approaches to test for congruence between louse and symbiont phylogenies.

(5) If needed, path-length distances calculated on phylogenetic trees can also be used, which provide an interesting method to test for congruence among different trees in a supertree approach.

Application is likely to be particularly appropriate for species delimitation questions in the fossil record [ 57], or to test for congruence between morphological and genetic differentiation without resorting to using the other evidence as a prior hypothesis [ 8].

Based on our results, we suggest that CADM is an excellent candidate to test for congruence and, when present, to estimate its level in phylogenomic studies where numerous genes are analysed simultaneously.

To examine whether the divergent lineages revealed by the ITS sequences represented potentially reproductively isolated cryptic species, we tested for congruence between genealogies from different loci using the partition homogeneity test and the topology-dependent permutation test.

We constructed the phylogenies for each organelle (fig. 4) and tested for congruence using KH and SH tests implemented in PAUP 4.0 beta 10 Win (Swofford 2002).

We performed likelihood-based tests for congruence [ 46] on the intI, 16S rRNA, fusA, rpoA, recA, gyrA gene trees for Deltaproteobacteria (clade 15) and Shewanella (clade 10).

We performed likelihood-based tests for congruence [ 46] on the intI and 16S rRNA gene phylogenies for Deltaproteobacteria (clade 15) and Shewanella (clade 10).

This was repeated 16 times and the tree with the highest likelihood from each iteration was tested for congruence using the Consense function of the Phylip software package.