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> -wrap-foot> Randomisation paired t test analysis based on node strength values.
The infusion test analysis based on equation (1) assumes that Pd and If [ 18] are constant, but if they varied during the investigation, both Pr and the estimation of Cout would be affected.
However, pair partners did not share refuges every night, and edge weights were all below 1. > -wrap-foot> Randomisation paired t test analysis based on ln-transformed edge weight values.
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Transmission disequilibrium test (TDT) analysis based on single SNPs was performed in Genehunter (v.2.1) and Haploview (v.3.32).
As a result, we take an alternative approach by conducting test-retest analysis based on group means, along the lines suggested by Cooke and Szumal (1993) [ 23].
All statistical calculations, including deriving means and SD, categorical data tests (that is, Chi square or Fisher's exact test), and correlation analysis based on Pearson statistics were conducted with SAS 9.3 (Cary, NC, USA).
Other statistical analysis methods conducted in this study were χ test and multivariate analysis based on the stratified Cox proportional hazards model.
The Scree test and Parallel analysis (based on a 100 replications) were used to identify the number of factors to extract and the Comparative Fit Index (CFI), the Root Mean Square Error of Approximation (RMSEA) and Standardised Root Mean Residual (SRMR) fit statistics also used to judge the adequacy of the final model.
Statistical significance of branches was tested by bootstrap analysis based on 1000 iterations.
The reliability and goodness of fit of the dendrogram obtained was tested by bootstrap analysis based on 1,000 permutations, followed by the program Consense module in the software package Phylip.
The strains were identified on the basis of phenotypic tests and genetic analysis based on polymerase chain reaction amplification using species-specific primers derived from 16S rRNA sequences, as previously reported [ 11].
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