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The bound consists of three terms which correspond to the three types of estimation errors: small mainlobe errors, errors due to sidelobe ambiguities, and random errors.
The variance in protein copy number
In the following, we refer to these features as annotation terms, which correspond, for example, to the specific molecular function (e.g. oxidoreductase activity) or domain (e.g. SH2) or pathway (e.g. glycolysis) annotated to genes and proteins.
Briefly, the collapsation step merges all terms which correspond to configurations in which K i+1 is T-reachable from s, for each possible subset T of K i+1, into a single term by replacing the variables in these terms with a single variable denoted with z T. Thus, the coefficient of z T is the sum of the coefficients of the original terms that were collapsed.
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In other words the convergence analysis decomposes into two terms: which corresponds to a noise-free SGD (it is as if we were running SGD with ) and which corresponds to a pure noise SGD (it is as if we were running SGD with ).
The second GO module covered signal transduction (GO 0007165) and more specific signaling pathway relevant terms, which corresponds to a significant sub gene set with the signal transduction function [21].
Looking at this integral, we can now pull out the term which corresponds to e^-at, just as we pulled out a term in the discrete-time case.
The probability density for the entries contains a weight function and a multiple trace trace interaction term, which corresponds to the representation of the Vandermonde-squared coupling on the basis of power sums.
β controls the weightage of the third term which corresponds to sparsity penalty term.
This switching between convergence and search phases is controlled by an activity term, which corresponds to the cell's growth rate.
One can consider that E u consists of an individual cost of u plus another term which corresponds to its impact on the others (v ≠ u).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com