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Exact(5)
We assume that there are δ = | T ′ − T | new annotations; of those, α terms were predicted as negatives by the predictor, whereas β terms were predicted as positives.
In this example, all five correct GO terms were predicted by ESG, but four of them were with weak scores.
GO terms were predicted for each assembled unigene to characterize functionality of gene products on the basis of their sequence similarities to known proteins in the Nr database.
CC and MF GO terms were predicted for the list of 3 GWAS genes with unknown GO terms ('orphan genes') using the probabilistic algorithm (color coded ranked lists are given at http://severus.dbmi.pitt.edu/engo/gogwas.html).html
These results indicate that several specific GO terms were predicted in the top 30 of the ranked list; similar trend was seen at lower thresholds as well, indicating the capability of the model to predict specific terms.
Similar(55)
In a multivariate model, knowledge of evolutionary terms was predicted by education and religious denomination.
We then consider PNFL and DREAM4 regulatory logics as approximately equal if the operator that combines the majority of terms is predicted by PNFL.
Exploitation of the GO DAG structure results in general terms being predicted at the top of the ranked lists.
Once one or more GO terms are predicted for a gene, we use FastSemSim to compute the similarity between each predicted GO term and each of the real GO term of the gene.
However, the model does not describe the data quantitatively for lower IPTG concentrations up to 5 μM (Additional file 1): this regime shows only a marginal rise in expression levels, and hence only a marginal increase of cost and benefit terms is predicted by the model, which contrasts with the measured cost and benefit that show significant increases.
"Companies that try to include these clauses in their terms are predicting that their customers will be unhappy and will bad-mouth their services," said Emily Rusch, executive director of the California Public Interest Research Group.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com