Using the above measures, CUSHAW2 is shown to be among the highest-ranked aligners in terms of alignment quality for both the SE and the PE alignment for a variety of error rates and varying amount of indel errors.
The performance evaluation shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed.
We found the "filtering" and "combined reference" strategies performed better than aligning reads directly to human reference in terms of alignment and variant calling accuracies.
A read is classified as unambiguously aligned (U set) if its best hit in terms of alignment score as has significantly better values of both as and hs than the second best hit; otherwise, it is discarded as ambiguously aligned (A set, so that | T | = | U | + | A | + | N |).
We suspect this is more about the type or length of training and that women athletes can learn something from dancers about the way they train, the precision of their balance and jumping in terms of alignment and frequency and duration of training.
It is determined that a device designed to have a large clear aperture of 15 μm would have an advantage in terms of alignment.
In terms of alignment characteristics, namely the radius of curvature R0, the lane width b0, the gradient s, the cross slope q and the sight distance D are recorded through measurements or desk review of the definitive design study.
In terms of alignment, naturalistic photographs invite an empathic stance from the reader, and may also lend the NGOs more credibility, which in turn may generate more donations according to Goering et al. (2011).
In terms of alignment accuracy and carbon carbon contacts, case 1 is desirable since most nanotube bundles are aligned along the strips with some interconnections between the adjacent edges (spacing ~500 nm).
The formulation in terms of alignment tensors has proven particularly versatile since one can formulate the elastic energy functional of the dislocation system in terms of dislocation density alignment tensors (Zaiser 2015) and then use this functional to derive the dislocation velocity in a thermodynamically consistent manner (Hochrainer 2016).
