Sentence examples for terms assigned with from inspiring English sources

The BLAST output was parsed and terms assigned with the assistance of in-house developed perl scripts accessing the MySQL database of "mygo" in a local Linux workstation.

For most of these sequences, the putative identity deposited into the dbEST correspond to the eukaryotic orthologous group (KOG [ 38]) each would belong (see Materials and Methods), with relevant Gene Ontology (GO [ 39]) terms assigned with the aid of AmiGO and GOblet [ 40] web servers.

(XLSX 120 kb) Additional file 3: Gene Ontology terms assigned to the contigs with significant BLAST hits to plant genes,listed under the categories 'biological processes', 'cellular components', and 'molecular functions'.

In the category 'molecular function', the most specific GO terms assigned to the contigs with full-length ORF were 'carboxylesterase'transcriptionion factor', 'monooxygenase'fattytty acid elongase' and 'polyol transmembrane transporter' activities (Table 3 and Supplementary Table S6).

We have applied this model to all the genes in the human genome with GO terms assigned (12222) and in total 2295 human genes are predicted with a probability score greater than 0.5 to be involved in cancer and 199 with a probability > 0.99 (Supplementary Table 2).

Similar assignments were seen with Cavendish Grande Naine unigene data, with 351,220 GO terms assigned across the three main categories.

To further assist in classification, GO terms are presented for each gene, with GO terms assigned using the Argot2 [ 33] method.

The model was build by averaging the probabilities given by 100 different models, each built with 240 genes known to be involved in cancer and with GO terms assigned and a different set of 240 genes randomly selected from the group of 11982 human genes with GO terms assigned and not known to be involved in cancer.

To build the model, 100 sets of 480 genes were used: each with the 240 genes known to be involved in cancer and with GO terms assigned and a different set of 240 genes randomly selected from the group of 11982 human genes with GO terms assigned and not known to be involved in cancer.

Every reagent that maps to multiple genes is shown with phenotype terms assigned, but in this case due to the off-target effect (Guest et al., 2011) we cannot know which phenotypes are associated to which genes, therefore the corresponding genes do not have phenotypes displayed.

Each M. genitalium protein with no GO terms assigned in the GOA file is susceptible to be annotated by using its orthologs in the other species.