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Exact(11)
From the values obtained by the chosen measure, the candidate terms are ranked.
Our terms are ranked by their score as determined with Eq. (1).
Once the extracted terms are ranked according to the relevance, one needs to decide how many extracted terms are relevant enough.
Every SVM model generates a predicted value, based on which all the GO terms are ranked, and the top ranked GO terms are considered as the predicted GO terms.
The enriched terms are ranked in descending order of significance.
The GO terms are ranked according to changes in the rtt109(T46A) (DZ6) mutant.
Similar(49)
The final sets of GO terms were ranked based on their p-value and the most significant (p-value<1e-3) were selected.
The final sets of GO terms were ranked based on their P-value.
These GO terms were ranked according to the order of the increasing P-values.
Significantly-enriched GO terms were ranked using the p-values with threshold at p < 0.05.
After all the differentially expressed genes were enriched into GO terms, the GO terms were ranked based on Z value.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com