Some clusters have not been assigned terms because the assignment threshold was missed or proteins containing the same terms were clustered in different protein clusters.
In relation to the short-term perspectives, the assignment process is a constraint by gating.
The dynamics of the marker populations can be expressed in terms of the assignment of markers to the haplotypes.
We can reformulate D in terms of the assignment matrix X as follows: where B is the degree matrix.
The two datasets also show reasonable agreement in terms of the assignment of transitioning genes to stage-pairs [Dataset. 10] (see Figure S1).
Moreover, because this characteristic is always good for a molecule that consists of a large number of atoms, to make the estimation performance more accurate, the dataset should be rearranged in terms of the assignment of either a receptor or a ligand by the order of the molecular size.
In terms of the assignment at the phylum level, Firmicutes (52.79%) and Bacteroidetes (41.57%) were predominant in the gut bacteria of mice, followed by Tenericutes (3%), Actinobacteria (0.18%), Cyanobacteria (0.023%), and Proteobacteria (0.0042%), with 2.41% sequences unmatched with the database (see Supplemental Material, Figure S2B).
Most genes have been assigned with multiple GO terms, and the assignments of GO terms are generally based on pathways in which the genes participate.
Mapping of the InterPro entries to gene ontology (GO) terms resulted in the assignment of 33,008 GO terms to 12,637 contigs (Additional file 1: Table S2).
Although we have used the term electronic taxonomy, the assignment of strains to known species and the identification and acceptance of new species cannot realistically be automated as it requires the experience, knowledge and judgement of taxonomists.
This problem is termed the client assignment problem (CAP) in this paper.
