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Thus a term that occurs frequently in a document (tf), but which occurs in a small proportion of the collection (idf) is a good feature.
For every MeSH term that occurs in the articles associated with a gene, we compute the statistical significance of the association.
This is the term that occurs in his 1874 essay, which bears the title "On the Hypothesis that Animals are Automata, and its History".
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A term-document matrix describes the frequency of terms that occur in a collection of documents.
That measure, according to the author, considers the absolute frequency of the term as a primary indication of the relevance of a term, and penalizes the terms that occur in the contrasting corpora of other domains dividing the term absolute frequency in the corpus of the domain by the geometric composition of the absolute frequency in each of the contrasting corpora.
It is not clear whether terms that occur in the other contexts are equivalent.
All terms that occurred fewer than 50 times across the entire corpus were also removed.
The GO terms that occurred with a significantly higher frequency (p<0.05) in the RpZRE3 dataset, compared to entire genome, were defined as over-represented.
In the reduced vector space, terms that occur in similar documents are located near one another even if they never co-occur in the same document, and topically related documents are grouped near one another based on their semantic relatedness.
Tables 4 and 5 give a summary of GO-terms that occurred more frequently in balancers or cell line-specific proteins, respectively, based on human GOA database searches (see Methods for details).
Then, pairs of terms that occur in a window of 20 tokens were considered.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com