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The annotation terms form the GO ontology were obtained from Blast2GO [ 60] by first mapping all DEUs to each term of Gene ontology database (www. geneontology. org) and then calculating the gene numbers for each GO term.
However, distinctive differences in term of gene numbers and expression patterns were observed as compared to Arabidopsis.
Using cross product term of gene expression profiles, it has two main advantages: 1) this general idea can be extended straightforwardly to test higher-order interaction effects among gene expression profiles for gene expression data.
Generally speaking, most mtDNAs are characterized by strand asymmetry in term of gene distribution.
GI14 and GI14.1 are similar in term of gene contents and both contain genes with predicted metabolic functions.
With this in mind, we will present the results and discussion in term of gene symbols instead of RefSeq IDs.
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We considered analysis of variance between two logistic regression models, with or without the term of gene-gene interaction.
Goeman, J. J. & Bühlmann, P. Analyzing gene expression data in terms of gene sets: methodological issues.
The GJ pan-genome has 23,167 gene families comprising 46,115 genes, which makes it 1.9% smaller than XI in terms of gene families and 2.5% smaller in terms of genes.
Animal mt genomes are usually extremely stable in terms of gene content, gene arrangement and genome organization23,25.
In terms of gene order, plastid genomes of the AHP lineage showed many syntenic regions (Fig. 1c).
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