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In this paper we focus on the task of term identification, which goes beyond NER to also include term mapping, i.e. the linking of terms to reference data sources.
First, the idea behind the term mapping was to assign each ChemOnt category to an equivalent ChEBI term or, if not applicable, the closest ChEBI classes that do not have a parent child relationship to each other.
Another 63 sequences showed no GO term mapping results.
We used a 2-step term mapping procedure called MarkIt [54] to properly flag a gene name with its appropriate Entrez Gene ID (http://www.ncbi.nlm.nih.gov/sites/entrez).nih.gov/sites/entrez
In addition, Dynamin-related protein 1 (Drp1) and abrupt (ab) are not recognized as mitochondrial in the gene ontology system but have nonetheless been experimentally shown to play a role in mitochondrial dynamics, indicating that GO term mapping may underestimate the number of mitochondria-associated genes.
Unfortunately, automatic term mapping is not available in MEDLINE for the search term validity.
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Term map: The term map (figure 3A) shows five clusters of terms that are used in patient safety literature.
A term map works in a similar way as a publication map.
In case of the term map, terms may sometimes be ambiguous due to problems with synonyms and homonyms.
MESH: MeSH term mapped to the disease used to conduct the text-mining.
Based on the relatedness of terms, terms are grouped together into clusters and a term map is constructed.
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