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In order to learn the spectral templates, in this study, we utilize the expectation-maximization (EM) algorithm.
In Supplementary Table 4, the AUC values are shown for all the templates in this study.
The retrieved 3D structures of the proteins used as templates in this study are: the tricorn interacting factor F1 with proline iminopeptidase (PIP) activity from Thermoplasma acidophilum (PDB ID: 1MTZ), proline iminopeptidases from Xanthomonas campestris pv.
The criteria used to position the templates in this study were defined, in contrast to previous studies, however all templating was carried out by a single surgeon and no attempt was made to assess the reliability of the templating and measurement technique.
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To demonstrate module changes of functional regions, we mainly computed the functional connectivity networks and their corresponding graph analysis features based on AAL 90 template in this study.
There are several variations of the KSF dimensions and Table 1 shows those defined by the developed toolkit [ 17] that were used as a thematic template in this study.
N t = {5} and N m = {1, …, 5} respectively represent a number of templates employed in this study and a number of templates from which the function of a query sequence was able to be identified.
Although primer module cooS-1F, cooS-3F, and cooS-3R did not produce detectable products from any of the templates analyzed in this study, each of these primer modules amplified cooS genes from gut communities of phylogenetically-higher termite species in a subsequent study (manuscript in preparation).
List of templates used in this study.
The templates used in this study are described in Figure 1.
The sequences of all primers and templates used in this study are depicted in Table 1.
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