The maximum contribution attributed to the UV-induced damage template was small across all SAMMs, the highest value being 13.2 % in DO45169, from the LIRI-JP_icgc dataset.
Apart from hRHO, the differences in sequence similarity between each target GPCR and the five template structures are small, ranging from 3% to 11% (Table 3)–see materials and methods for a definition of percentage of sequence similarity.
The templates are also small enough to be sent via e-mail the 47-compone-mail theyotic annotation pipeline described below is only 28 kb.
Similar observations were found for the ∼3% results where 43 out of 65 cluster centers were < 3% dissimilar from their nearest template sequences and each of the 43 template sequences is uniquely mapped by one of these 43 cluster centers, while the remaining 22 cluster centers were > 7% from their nearest template sequences and all of them are small (with < 10 sequences).
While substitution and recombination errors of our optimized protocol for HIV-1 RNA extraction and an RT-PCR are low, the other main limitation was that the number of available template molecules was small in some samples (see also Iyer et al., 2015).
The IPD ratios for the 5mC-modified templates are visible as small excursions from the background.
Similar as in FINDSITEfilt, the ligands of the top ranked templates are used as reference small molecules for ligand based virtual screening, where the appropriate template ligands are obtained from the DrugBank [48] and ChEMBL [49] databases.
If d to template.A is smaller than that to template.B, a prediction label of subclass A is assigned to the test sample, and a prediction of subclass B is similarly performed.
Manifestly, the domain size of the Co/Pd multilayers decreased as the size (or density) of nanopores of the AAO templates was getting smaller (or higher).
As indicated by the open arrows in Figure 3b, c, d, the saturation field of the Co/Pd multilayers increased as the size (or density) of nanopores of the AAO templates was getting smaller (or higher).
