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Sequences that had more than 50% identity to the sequence of the closest template were chosen as orthologs or isologs.
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The template was chosen as it was found to be effective for evaluating AALFI and it provided clear guidelines and a method to automatically calculate metrics relating to the usability.
This template was chosen because it is a potassium channel, for which the three-dimensional structure of its open conformation is known.
This particular template was chosen on the basis of its high sequence identity with the Ras C-terminal peptide (sequence alignment shows a 44% sequence identity with a ratio of aligned/gap positions of 16/0 as yielded by a global alignment algorithm), its low-density map of inter-residues interactions and a relatively high relation of surface/buried residues.
The 40-week gestation template was chosen because it most closely matched the median age of the infants.
A 3-month-old template was chosen because it is closest to the mean age of our sample (2.8 months, gestation corrected).
Some methods to discover monotonic expression patterns are correlation-based, where a seed feature or template is chosen to find genes with good correlation.
To limit isolation bias, the colony closest to the cross-secting line of each Petri plate (designated by a plate-sized template) was chosen for passaging.
A native BSL DNA template was chosen for inverse PCR that was not used for metagenomic sequencing and was not pre-amplified with ϕ29 polymerase, in order to rule out the possibility of spurious chimerism during sample preparation or sequence assembly.
The k templates are chosen by computing Hamming distances between an individual's current sampled haplotypes and each possible template haplotype.
In searching for possible metabolic protein targets for known antibacterial compounds, template structures were chosen from PDB crystal structures that included the compound bound to a protein.
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