Sentence examples for template structures using from inspiring English sources

The RMSD of the TMH backbone atoms was calculated for each pair of template structures using the McLachlan algorithm [69] as implemented in the program ProFit (Martin, A.C.R., http://www.bioinf.org.uk/software/profit/).uk/software/profit/

In order to minimize the effects of the lack of knowledge on the experimental study factors, a training session was conducted with all the participants about basic concepts related to SPL and use cases, as well as about the use case template structures used in the experiment.

In agreement with the type of the template structures used, the spatial configuration of the C-terminal, surface-exposed part of motif IV of HEN1 at the bottom of the putative substrate-binding pocket is characteristic for small-molecule MTases.

The I-TASSER algorithm is an advanced modeling method that searches the SCOP database [ 29] for parent template structures, uses these parent structures to comparatively model short segments of the query protein, and connects these segments using de novo modeling techniques.

Molecular superimposition was carried out on the template structure using atom-based RMS fit method.

In order to study the structural and conformational variability between the RF protein families, selected members of the RF superfamily were modeled using the best closed PDB templates structures using SWISS-MODEL, a protein structure homology-modeling server, via the ExPASy web server [40] [42].

For this, it employs the VOROLIGN structural comparison between the model structure for the target with the native template structure used for the model.

Figure 3 shows the alignment between PHO36 and the template structure used for the modelling procedure.

The alignment between ADIPOR1 and the template structure used for the modelling procedure is reported in Figure 3.

The rescoring then VOROLIGNs the model structure with the template structure used for the model building.

The template structure used for the modelling is that of SC18 HA (PDB code 1RUZ).