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Depending on the template structures, the carbon patterns can be quadrangular or hexagonal in shape.
The three-dimensional model of the three human adiponectin chains (UniProt code: Q15848, region 108 244) was performed by a comparative modelling strategy using as template structures the related mouse adiponectin chains (PDB code: 1C3H).
Therefore in order to assess the impact of these features on the template structures, the root mean squared deviation (RMSD) was calculated between each TMH of each of the 5 templates; Table 6 shows a sample of these results (TMH2), with the remaining TMH RMSDs being found in Text S3).
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Using cognitive knowledge and frame-template structures, the system can extract the relevant concepts in geometry word problems for comprehension.
The model is first built by transferring the Cα coordinates of the template structures to the aligned residues in the query sequence.
This is done by directly transferring the Cα coordinates of the template structures to the aligned residues in the query sequence.
The fragments in the aligned regions are used directly from the template structures and the unaligned regions are modelled with ab initio simulations.
The consensus domain assignments of the template structures dominate the boundary predictions.
(iii) If a homology model exists, we then check for sequence identity (S.I). between the query and template structures and the completeness of the homologous structure.
Low resolutions of the template structures were the probable cause of slightly low ERRAT score of LPKC structure.
Results files contain the superposed template structures, and the alignment between each subunit file and template file are generated inside the HHpred program.
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